Navigation¶
- Installation
- API Documentation
- Examples
- Introducing the Girder API
- Procedure for managing a typical annotation project
- Tips for scaling annotation rendering
- Local backup and SQL querying of annotation data
- Creating gallery images for annotation review
- Local processing of whole-slide images using large_image
- Color Deconvolution
- Color normalization
- “Smart” color augmentation
- Nuclei Segmentation
- Positive pixel count and parallel processing with Dask
- Converting annotations to semantic segmentation mask images
- Converting annotations to object segmentation mask images
- Converting masks back to annotations
- Merging annotations from tiled arrays
- Merging polygons (general purpose)
- Tissue Detection
- Color thresholding semantic segmentation
- Finding cellular regions with superpixel analysis
- Analyzing remotely hosted images with the girder client
- Contributing
- Credits